Bioinformatics tools

 

2PMLab khaeuk (Lowan Haeuk Kim) · GitHub

 (Proteins & Peptides Mining Lab)

If you have any query regarding our method,

please contact 2PMLab's researchers  Click GIF – edit | Stone Ambassador Australia

Bioinformatic Tools (Webserver) for Bioactive Peptide Prediction:

  1. TIPred: a novel stacked ensemble approach for the accelerated discovery of tyrosinase inhibitory peptides Click Here Sticker by conversionly for iOS & Android | GIPHY
  2. TROLLOPE: A novel sequence-based stacked approach for the accelerated discovery of linear T-cell epitopes of hepatitis C virus Click Here Sticker by conversionly for iOS & Android | GIPHY
  3. PSRQSP: An effective approach for the interpretable prediction of quorum sensing peptide using propensity score representation learningClick Here Sticker by conversionly for iOS & Android | GIPHY
  4. iAMAP-SCM: a novel computational tool for large-scale identification of antimalarial peptides using estimated propensity scores of dipeptides Click Here Sticker by conversionly for iOS & Android | GIPHY
  5. SCMB3PP: Improved prediction and characterization of blood-brain barrier penetrating peptides using estimated propensity scores of dipeptides Click Here Sticker by conversionly for iOS & Android | GIPHY

  6. MetaNaBP: Leveraging a meta-learning approach to advance the accuracy of Nav blocking peptides prediction Click Here Sticker by conversionly for iOS & Android | GIPHY
  7. StackPAP: Accelerating the discovery of plant allergenic proteins using a stacked ensemble-learning framework Click Here Sticker by conversionly for iOS & Android | GIPHY

References:

 

 



Mesayamas Kongsema

 

t30

First name-Last name: Mesayamas Kongsema

E-mail: This email address is being protected from spambots. You need JavaScript enabled to view it., This email address is being protected from spambots. You need JavaScript enabled to view it.

Tel: +66-2-562-5555 ext 647834

Academic position: Lecturer

Main Research Focus: See in Mesayamas.pdf

Education:

Qualifications

Graduation Year

Graduation University/Country

B.Sc. Biology

2007

Kasetsart University,

Thailand

M.Sc. Molecular Medicine

2010

University College London,

United Kingdom

Ph.D. Clinical Medicine Research

2014

Imperial College London,

United Kingdom

Research interests: Cancer research, Protein post-translational modification, Chemotherapy resistance, Protein-protein/Protein-drug interaction

Academic publications (During 5 years):

1.       National/International research publications

International publications

Waiyawat J, Kongsema M, Sinthuvanich C, Chienthavorn O, Teanchai C, Akkarachaneeyakorn K. Fabrication of Calcium Phosphate Composite Polymer/SLS-stabilized Emulsion-based Bioactive Gels and Their Application for Dentine Tubule Occlusion. J Oral Biosci. 2019 Dec 16. pii: S1349-0079(19)30243-9. doi: 10.1016/j.job.2019.11.002. [Epub ahead of print]

Kongsema M, Wongkhieo S, Khongkow M, Lam EW, Boonnoy P, Vongsangnak W, and WongEkkabut J. Molecular mechanism of Forkhead box M1 inhibition by thiostrepton in breast cancer cells. Oncology Reports. 2019 42: 953-962. doi: 10.3892/or.2019.7225

Azariana MH, Boochathuma P, and Kongsema M. Biocompatibility and biodegradability of filler encapsulated chloroacetated natural rubber/polyvinyl alcohol nanofiber for wound dressing. Materials Science and Engineering: C. 2019. doi: 10.1016/j.msec.2019.109829

Kongsema M, Zona S, Karunarathna U, Cabrera E, Man EP, Yao S, Shibakawa A, Khoo US, Medema RH, Freire R, Lam EW. RNF168 cooperates with RNF8 to mediate FOXM1 ubiquitination and degradation in breast cancer epirubicin treatment. Oncogenesis. 2016 Aug 15;5(8):e252. doi: 10.1038/oncsis.2016.57.

Khongkow P, Middleton AW, Wong JP, Kandola NK, Kongsema M, de Moraes GN, Gomes AR, Lam EW. In Vitro Methods for Studying the Mechanisms of Resistance to DNA-Damaging Therapeutic Drugs. Methods Mol Biol. 2016;1395:39-53. doi: 10.1007/978-1-4939-3347-1_3.

Karunarathna U*, Kongsema M*, Zona S, Gong C, Cabrera E, Gomes AR, Man EP, Khongkow P, Tsang JW, Khoo US, Medema RH, Freire R, Lam EW. OTUB1 inhibits the ubiquitination and degradation of FOXM1 in breast cancer and epirubicin resistance. Oncogene. 2016 Mar 17;35(11):1433-44. doi: 10.1038/onc.2015.208. Epub 2015 Jul 6.

Kelly DJ, Warren SC, Alibhai D, Kumar S, Alexandrov Y, Munro I, Margineanu A, McCormack J, Welsh NJ, Serwa RA, Thinon E, Kongsema M, McGinty J, Talbot C, Murray E, Stuhmeier F, Neil M,Tate E, Braga V, Lam E, Dunsby C, French P, Anal. Methods. 2015. 7;4071. Doi: 10.1039/C5AY00244C

Myatt SS*, Kongsema M*, Man CW, Kelly DJ, Gomes AR, Khongkow P, Karunarathna U, Zona S, Langer JK, Dunsby CW, Coombes RC, French PM, Brosens JJ, Lam EW. SUMOylation inhibits FOXM1 activity and delays mitotic transition. Oncogene. 2014 Aug 21;33(34):4316-29. doi: 10.1038/onc.2013.546. Epub 2013 Dec 23.

Proceeding

Waiyawat J, Akkarachaneeyakorn K, Changpongpan P, Kongsema M, Teanchai C, and Chienthavorn O. (2019). Synthesis of calcium phosphate composite organogels by using castor oil and sorbitan monopalmitate based for dentine occlusion material. IOP Conference Series: Materials Science and Engineering, Volume 625, conference 1 (https://iopscience.iop.org/article/10.1088/1757-899X/625/1/012024)

Pomjunya A and Kongsema M. (2018, June). Effect of Cordyceps militaris extract on cell death inducing in metastasis colon cancer cell line. Proceedings of the 8th National and International Graduate Study Conference. Princess Maha Chakri Sirindhon Anthropology Centre. Bangkok

Wongkhieo S, Khongkow, M, Choowongkomonc K and Kongsema M. (2018, April). Thiostrepton treatment inhibits breast cancer cell growth via cellular senescence. Proceedings of International Conference of Agriculture and Natural Resources. Hotel Windsor Suites & Convention Bangkok Thailand.

Wilasri T, Pinyopummin A, Kongsema M and Pradermwong K. (2018, April). Examination of chilled boar semen quality supplemented with plant extracts. Proceedings of International Conference of Agriculture and Natural Resources. Hotel Windsor Suites & Convention Bangkok Thailand.

Soncha N, Ketsing J and Kongsema M. (2018, January). Grade 10th Students’ Scientific Reasoning in Biology. Proceedings of the 56th Kasetsart University Annual Conference. Kasetsart University, Bangkok.

Pomjunya A and Kongsema M. (2017, December). Cytotoxic effect of Cordyceps militaris powder on colon cancer cell lines. Proceedings of the 45th National Graduate Research conference and 8th International Graduate Research Conference. Nakhon Ratchasima Rahabhat University Thailand. (pp. 38-46)

Wut Taksintum

t20

Dr. Wut Taksintum

E-mail: This email address is being protected from spambots. You need JavaScript enabled to view it.

Tel: 02-562-5555-3266

Education:  

 

-          Ph.D. (Environmental Science) Kasetsart University 2012

 

Research interests: - Vertebrate Taxonomy (except fish)

- Wild life Ecology

Research publications:

Taksintum, W., W. Ruamthum, B. Pulnil and V. Lauhachinda. 2009. Diversity of anuran and habitat type of their tadpoles in Kui Buri National Park, Thailand. KKu Sci J. 37(Supplement): 22-29.

Taksintum, W., W. Ruamthum, B. Pulnil and V. Lauhachinda. 2010. Comparison of Anuran Species and Habitat Utilization in Kui Buri National Park Area and Adjacent Agricultural Area. Journal of Wildlife in Thailand. 17(1): 104-123.

Aowphol, A., A. Rujirawan, W. Taksintum, S. Arsirapot and D. S. Mcleod. 2013. Re-evaluating the taxonomic status of Chiromantis in Thailand using multiple lines of evidence (Amphibia: Anura: Rhacophoridae). หน้า 101-123. Zootaxa Volume 3702 Issue 2.

Aowphol, A., A. Rujirawan, W. Taksintum, Y. Chuaynkern and B. L. Stuart. 2015.A new caruncle-bearing Limnonectes (Anura: Dicroglossidae) from northeastern Thailand. หน้า 258-270. Zootaxa Volume 3956 Issue 2.

 

Thularath Toommakorn

t16

Mrs. Thularath Toommakorn

Lecturer

E-mail: This email address is being protected from spambots. You need JavaScript enabled to view it.

Tel : 0-2562-5555 ext 3245

Education:      
B.Sc. (Biology), Khonkaen University, Khonkaen, Thailand. 1997
M.Sc. (Zoology), Kasetsart University, Bangkok, Thailand. 2001

Scholarships
1998-2000    University Development Committee (UDC) for Master program at Kasetsart University

Research interests:
- Acute and chronic toxicity from plant extract
- Ectoparasite and endoparasite 

 

Piyama Tasanasuwan

t15

First name-Last name: Piyama Tasanasuwan

Email: This email address is being protected from spambots. You need JavaScript enabled to view it., This email address is being protected from spambots. You need JavaScript enabled to view it.

Tel: 081-9143288

Academic position: Lecturer

Main Research Focus: See in Piyama.pdf

Education:

Qualifications

Graduation Year

Graduation University/Country

B.Sc (Genetics)

1989

Chulalongkorn University, Thailand

M.Sc. (Bioprocess Technology)

1997

Asian Institute of Technology, Thailand

Ph.D. (Molecular Biology and Biotechnology)

2002

University of Sheffield, United Kingdom

Research interests:Genetic diversity of Thai rice germplasm using nucleotide sequence and DNA markers, Genetic of rice blast fungus in Thailand

Academic publications(During past 5 years):

International research publications

Pattaraborn MoonsapNutthalak LaksanavilatSittipun SinumpornPiyama TasanasuwanSureeporn Kate-NgamChatchawan Jantasuriyarat (2019) Genetic diversity of Indo-China rice varieties using ISSR, SRAP and InDel markers. Journal of Genetics 98:80.

Pattaraborn Moonsap , Nutthalak Laksanavilat, Piyama Tasanasuwan, Sureeporn Kate-Ngam and Chatchawan Jantasuriyarat (2019) Assessment of genetic variation of 15 Thai elite rice cultivars using InDel markers. Crop Breeding and Applied Biotechnology 19: 15-21.

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